import numpy as np import matplotlib.pyplot as plt import sys import os labels = [ "Norm (Normalization)", "nv (Vesicle concencentration x10^6 (nm^-3))", "Rm (Radius of the vesicle (nm))", "Z (Radius polydispersity)", "n_TR (Tris fraction )", "d_TR (Tris width (nm))", "s_TR (Tris position (nm))", "d_Chol (CholCH3 position (nm))", "s_Chol (CholCH3 width (nm))", "d_PCN (PCN position (nm))", "s_PCN (PCN width (nm))", "d_CG (CG position (nm))", "s_CG (CG width (nm))", "A_L (Area per lipid (nm²))", "s_D_C (HC excess std (nm))", "s_CH2 (HC smearing (nm))", "d_CH (CH position (nm))", "s_CH (CH width (nm))", "s_CH3 (CH3 width (nm))", "r_PCN (V_PCN/V_HL)", "r_CG (V_GG/V_HL)", "r12 (V_CH/V_CH2)", "r32 (V_CH3/V_CH2)", "T (Temperature (°C) )", "V_BW (Bound-water volume (nm³))", "Con (Constant (nm⁻¹))" ] def print_x2_stats(dir, threshold=1.0): stats = get_x2_stats(dir, threshold=threshold) thres_str = str(int(100*threshold)) if threshold < 1: print(" x2 (best %s%%)" % thres_str) else: print(" x2 ") print(" min: %f" % stats["min"]) print(" max: %f" % stats["max"]) print("mean: %f" % stats["mean"]) print(" std: %f" % stats["std"]) def std_vs_threshold(dir, obs): x2 = np.genfromtxt(os.path.join(dir, "Results_collection-X2.dat")) if obs == "x2": d = x2 suptitle= "x2" else: d = np.genfromtxt(os.path.join(dir, "Results_collection.dat"))[:,obs] suptitle = labels[obs] x2_min = x2.min() x2_p2p = x2.max() - x2.min() d_first_decile = d[x2 < x2_min + 0.1*x2_p2p] thres = np.linspace(0.01, 1, 100) std = np.zeros_like(thres) card = np.zeros_like(thres) for (i,t) in enumerate(thres): d_filtered = d[x2 < x2_min + t*x2_p2p] std[i] = d_filtered.std() card[i] = len(d_filtered) fig, axes = plt.subplots(1, 2) plt.suptitle(suptitle) ax1 = axes[0] ax3 = axes[1] ax1.set_xlabel("threshold") ax1.set_ylabel("stddev", color="blue") ax1.tick_params(axis='y', labelcolor="blue") ax2 = ax1.twinx() ax2.set_ylabel("cardinality", color="red") ax2.tick_params(axis='y', labelcolor="red") ax3.set_ylabel("all samples", color="blue") ax3.tick_params(axis='y', labelcolor="blue") ax4 = ax3.twinx() ax4.set_ylabel("1st decile", color="red") ax4.tick_params(axis='y', labelcolor="red") ax1.plot(thres, std, color="blue") ax2.semilogy(thres, card, color="red") ax3.hist(d, color="blue") ax4.hist(d_first_decile, color="red") plt.show() def get_x2_stats(dir, threshold=1.0): x2 = np.genfromtxt(os.path.join(dir, "Results_collection-X2.dat")) p2p = x2.max() - x2.min() x2_filtered = x2[x2 < (x2.min() + threshold * p2p)] stats = { "min" : x2_filtered.min(), "max" : x2_filtered.max(), "mean" : x2_filtered.mean(), "std" : x2_filtered.std() } return stats if __name__ == "__main__": if len(sys.argv) > 1 and os.path.isdir(sys.argv[1]): dir = sys.argv[1] else: dir = "POPC-test" print_x2_stats(dir)